Managing inventory can be a headache for growing eCommerce businesses without the right tools. Using reliable eCommerce inventory management software helps prevent stockouts, overstocking, and tracking issues that disrupt sales and hurt customer satisfaction.
80% of store associates find real-time out-of-stock visibility a major challenge. Retailers struggle with inventory due to viral trends, local events, seasons, and educational calendars, causing demand spikes that need accurate forecasting. Manual systems are error-prone and time-consuming, hindering growth.
With so many options available, choosing the right eCommerce inventory management software can be overwhelming. Every business has unique needs, and software varies in features like real-time tracking, integration, and reporting. Careful consideration is key to finding the best fit.
Fortunately, many businesses have already embraced this technology, seeing improvements in accuracy, time savings, and decision-making. Want to discover how these tools can optimize your eCommerce business and boost profitability? Let’s dive into the top options available in 2025.
Key Takeaways
|
Table of Content:
Table of Content
What Is eCommerce Inventory Management Software?
For eCommerce businesses, managing inventory across multiple platforms can be challenging. The right eCommerce inventory management software addresses this by offering real-time tracking and centralized control, which streamlines your processes and ensures accuracy at every stage.
A key feature of this software is its ability to automate tasks that would otherwise take considerable time, such as updating stock levels, processing orders, and generating reports. Additionally, its seamless integration with a warehouse management system makes it even easier to track stock in real time.
What’s more, it integrates with essential back-end systems like ERP software to provide a comprehensive overview of inventory and sales data. This ensures your inventory is always aligned with your business operations, allowing you to respond quickly to demand fluctuations, forecast accurately, and keep customers happy.
By centralizing data and automating key functions, the software helps eliminate inefficiencies, reduce human errors, and ultimately save time and money. This level of automation can drive substantial improvements in overall business performance.
Benefits of eCommerce Inventory Management Software
Managing an eCommerce store requires handling inventory across platforms efficiently. The right software improves tracking, enhances efficiency, and saves costs. Here are its key benefits:
1. Increased efficiency across multiple channels
An effective inventory management software integrates seamlessly with various eCommerce platforms, allowing businesses to sync stock levels across all sales channels. This centralization saves valuable time by providing a single place to manage inventory, reducing the need for manual updates and preventing errors like overselling.
2. Better sales forecasting for smarter decisions
With detailed data at your fingertips, eCommerce software allows you to forecast demand more accurately. This leads to more informed decisions about stock purchases and replenishment, ensuring that you’re always prepared for shifts in demand, whether seasonal or driven by external events.
3. Time-saving automation features
Inventory management software automates routine tasks, such as updating stock levels, processing orders, and entering data. By eliminating the need for manual work, businesses can save time, reduce labor costs, and minimize the risk of human error that can lead to costly mistakes.
4. Cost savings through reduced stockouts and overstocking
Balancing inventory levels is challenging, but inventory software ensures you’re not overstocking or running out of products. With real-time updates, you can avoid costly stockouts and reduce excess inventory, ultimately saving money and improving your cash flow.
5. Improved customer satisfaction with real-time inventory tracking
Accurate inventory data allows businesses to ensure that they always have the right products in stock. By offering real-time updates and preventing stockouts, eCommerce inventory management software helps improve customer satisfaction by providing timely deliveries and better order fulfillment.
6. Streamlined operations and reduced errors
Manual inventory tracking is often riddled with mistakes that can lead to inefficiencies, such as order delays or incorrect stock counts. With automated updates and real-time visibility, inventory management software minimizes human error, making operations smoother and more reliable.
7. Enhanced inventory accuracy for fewer mistakes
One of the most significant advantages of using inventory management software is its ability to improve inventory accuracy. By continuously tracking and updating stock levels, businesses can avoid common inventory mistakes such as overstocking or running out of products, ultimately helping businesses run more smoothly.
The Challenges of eCommerce Inventory Management Software
While eCommerce inventory management software provides essential benefits for online retailers, there are several hurdles that businesses need to overcome in order to fully leverage its potential. Despite its advantages, adopting and maintaining this software isn’t always straightforward.
1. Handling large product volumes and SKUs
Managing a large inventory with numerous SKUs and product variations can overwhelm some inventory systems. As businesses grow, eCommerce software with inventory management must keep pace with a wider variety of products, ensuring no errors or discrepancies.
2. Integration with multiple sales channels
One of the main challenges with inventory management software for eCommerce is ensuring seamless integration across multiple sales channels. Whether it’s your own website, marketplaces, or even social platforms, maintaining real-time synchronization is crucial for accurate stock tracking and order management.
3. Real-time inventory tracking for accuracy
Without real-time tracking, eCommerce inventory software risks inaccuracy, causing overselling or stockouts. Retailers need instant updates to prevent lost sales and customer frustration. Real-time tracking is crucial for operational efficiency.
4. System scalability as the business grows
As your business scales, so does the complexity of your inventory. Inventory management software for eCommerce must be able to handle increasing product volumes, new sales channels, and higher order frequencies. The scalability of the system is key to ensuring smooth business operations as demand grows.
5. Training and system adoption
Despite the power of eCommerce software with inventory management, challenges arise when employees fail to use the system effectively. Proper training and onboarding are essential to minimize errors. A well-trained team ensures better system adoption, boosting productivity.
15 Best eCommerce Inventory Management Software in 2025
With so many solutions available, finding the best eCommerce inventory management software for your business can be overwhelming. Each option comes with different features, integrations, and pricing, making the decision process more complex.
To support that, we’ve compiled a list of the 15 top-performing software options in 2025. This guide will help you compare key features and choose the most suitable eCommerce software with inventory management for your operations.
1. HashMicro
HashMicro is a leading ERP solutions provider in the Philippines. It offers various products to help businesses improve their eCommerce efficiency. HashMicro is known for its flexible, fully integrated systems that meet the needs of businesses in various industries.
Backed by a team of experts, HashMicro ensures smooth implementation and ongoing support. Its strength lies not only in its technology but also in its ability to adapt to diverse industries, helping businesses stay agile in a rapidly changing market landscape.
For eCommerce teams struggling to keep inventory aligned across websites, marketplaces, and offline channels, this eCommerce software with inventory management simplifies and streamlines the process. A free demo and live consultation helps identify the most relevant features for your operation.
From reducing stock inaccuracies to enhancing warehouse performance, HashMicro’s system automates key inventory workflows. The software also supports demand planning, helping prevent both overstocking and product shortages with intelligent forecasting and reordering.
This software has comprehensive features such as:
- RFID warehouse rack stock in-out automation: Automates stock movement tracking on warehouse racks for faster and more accurate updates.
- OCR for receiving: You can speed up the receiving process and ensure inventory data is always accurate and up-to-date.
- Stock forecasting: With this feature, you can proactively reorder stock, optimize inventory levels, and enhance customer satisfaction.
- Run rate reordering rules: You can forecast product quantities based on market trends, ensuring the warehouse has enough items to meet demand without overstocking or understocking.
- Packaging management: This feature helps in organizing and efficiently storing goods, making inventory tracking easier.
- Fast-moving and slow-moving stock analysis: This feature helps you identify products with high and low turnover rates, allowing for strategic planning such as prioritizing stock procurement, running sales promotions, and clearing out slow-moving items.
- Racking capacity with putaway strategy: This feature assists the warehouse team by providing detailed information on placing items in small locations within the warehouse without remembering them.
- Stock reservations & reporting: You can ensure the availability of desired items and manage inventory more efficiently.
- Stock optimizer per warehouse: This feature maximizes overall warehouse space usage and improves operational efficiency in stock management.
- Pick, Pack, Delivery 3-step route warehousing: You can enhance warehouse operational performance and ensure smooth item delivery with this top-notch feature.
- Consignment management: You can manage stock updates, track sales, and handle payments to consignors effectively
| Pros | Cons |
|
|
Looking to simplify your online store’s inventory management? Consider exploring HashMicro’s eCommerce Inventory Management Software. With features like real-time tracking, automated stock updates, and smooth integration with your existing platform, it can help you stay organized and avoid costly mistakes.
If you want to simplify your inventory operations while increasing accuracy, click the banner below to explore whether HashMicro is the right solution for your business.
2. Finale Inventory
Finale Inventory is a straightforward solution that combines basic inventory tracking with equipment maintenance support. It allows businesses to monitor tool performance, schedule upkeep, and manage spare parts, features that benefit warehouse-heavy eCommerce operations.
Finale eCommerce Inventory Software has the following features:
- Inventory control
- Order management
- Barcode scanning
- Equipment performance tracking
| Pros | Cons |
|
|
3. Lightspeed
Lightspeed is a cloud-based POS and inventory system designed primarily for retail businesses. It also includes equipment maintenance features, allowing users to manage service schedules and keep assets in top condition.
Although it’s best known for its point-of-sale capabilities, Lightspeed offers tools that support ecommerce software with inventory management, making it suitable for retailers that need to manage both sales and asset upkeep from a single platform.
Lightspeed eCommerce management software has the following features:
- POS integration
- Real-time inventory tracking
- Asset maintenance scheduling
- Comprehensive reporting tools
| Pros | Cons |
|
|
4. Zoho
Zoho Inventory is a cloud-based inventory management tool that also supports equipment maintenance. It enables users to schedule service intervals, monitor equipment condition, and carry out preventive maintenance to reduce downtime and maintain smooth operations.
eCommerce inventory software by Zoho has features such as the following:
- Multi-channel inventory management
- Order management
- Warehouse management
- Integrations with various eCommerce platforms
| Pros | Cons |
|
|
5. Fishbowl
Fishbowl provides both on-premise and cloud-based solutions for inventory management, catering to eCommerce, retail, and manufacturing businesses. It supports features like inventory tracking, custom labeling, automation, and seamless payment integration with accounting systems.
For businesses that need flexibility across physical and digital channels, Fishbowl can serve as a dependable inventory management software solution for eCommerce, especially when integrating POS and sales platforms.
Here are the features of Fishbowl inventory software:
- Inventory tracking and management
- Order management
- Real-time inventory updates
- Mobile access
| Pros | Cons |
|
|
6. Cin7
Cin7 is an all-in-one inventory platform that supports product tracking alongside equipment maintenance. It enables users to monitor asset performance, schedule regular maintenance, and manage tools or machines to help minimize downtime and enhance operational flow.
While it’s mainly known for inventory and order control, Cin7 can also serve businesses looking for eCommerce software with inventory management that extends into basic asset upkeep.
The following are the features of Cin7 stock management software:
- Centralized Inventory Database
- Inventory Level Dashboards
- Stock History Reporting
- Low Stock Notifications
| Pros | Cons |
|
|
7. Trunk
Trunk offers a simplified inventory management solution that also includes light equipment maintenance capabilities. It helps businesses stay on top of service schedules, monitor asset conditions, and maintain operational readiness across fulfillment workflows.
Inventory Management App Trunk has features such as the following:
- Real-time inventory sync
- Multi-channel support
- Maintenance scheduling
- Asset condition tracking
| Pros | Cons |
|
|
8. inFlow
inFlow offers a practical solution for businesses that need reliable inventory tracking with added equipment maintenance support. It helps monitor asset usage, plan routine checkups, and reduce the chances of costly downtime.
While its core features focus on inventory, it also supports teams looking for inventory management software eCommerce businesses can use to streamline multiple processes within a single system.
inFlow has various features, such as the following:
- Centralized Inventory Database
- Inventory Level Dashboards
- Stock History Reporting
- Inventory Forecasting
| Pros | Cons |
|
|
9. Sage Inventory Advisor
Sage Inventory Advisor offers a straightforward solution for managing inventory alongside essential maintenance tasks. It allows users to schedule equipment servicing, monitor asset conditions, and keep operations running smoothly.
Moreover, it supports businesses looking for eCommerce inventory management software that helps optimize both stock and asset performance in one platform.
The following are the features of Sage Inventory Advisor:
- Inventory optimization
- Demand forecasting
- Supplier management
- Real-time stock tracking
| Pros | Cons |
|
|
10. ClickUp
ClickUp’s eCommerce inventory management software simplifies equipment maintenance planning and monitoring. Its intuitive dashboard offers real-time status updates, streamlining task tracking, simplifying upkeep, and minimizing downtime.
ClickUp inventory management app has the following features:
- ClickUp Views: Board, List, Gantt, Calendar
- ClickUp Automation
- ClickUp AI support
| Pros | Cons |
|
|
11. Netsuite
Netsuite is a cloud-based inventory software that can also be utlized as a eCommerce inventory management software which streamlines stock, orders, and shipments in one platform. Moreover, its advanced features adapt to changing retail needs, resulting in smoother operations and better inventory control.
Key features:
- Pelacakan stok multi-lokasi
- Otomatisasi proses pemesanan ulang
- Laporan analitik untuk pengambilan keputusan
| Pros | Cons |
|
|
12. Katana
Katana offers eCommerce inventory management software that helps businesses effectively manage both inventory and production. This solution provides full inventory control over raw materials and finished goods, supporting seamless and efficient operations.
Key features:
- Pelacakan komponen dan perakitan
- Manajemen gudang dan lantai
- Penyimpanan berbasis cloud untuk akses data
| Pros | Cons |
|
|
13. Brightpearl
Brightpearl is an eCommerce inventory management software designed to automate and simplify inventory management across multiple sales channels. This software integrates back-office functions such as accounting, procurement, and order management for a seamless workflow.
Key features:
- Sinkronisasi data inventaris secara otomatis
- Integrasi dengan platform eCommerce dan POS
- Pelacakan inventaris multi-lokasi
| Pros | Cons |
|
|
14. Linnworks (back to ph)
https://www.hashmicro.com/ph/blog/wp-admin/post.php?post=5858&action=edit
Linnworks serves as an eCommerce inventory management software that also supports equipment maintenance. It enables users to schedule maintenance, track equipment conditions, and manage spare parts efficiently, helping to minimize downtime and improve overall operations.
The following are the features of Linnworks inventory:
- Multi-channel order management
- Inventory control
- Automation tools
- Reporting and analytics
| Pros | Cons |
|
|
15. Shiphero
ShipHero includes eCommerce inventory management software capabilities with tools for equipment maintenance. It helps companies schedule and oversee the upkeep of logistics assets, ensuring equipment runs smoothly and operations stay efficient.
Shiphero inventory stock software has the following features:
- Shipping management
- Inventory tracking
- Order fulfillment
- Logistics asset maintenance
| Pros | Cons |
|
|
How to Choose the Most Suitable eCommerce Inventory Management Software
Choosing the right eCommerce inventory management software involves several important aspects that affect how smoothly your business runs and grows. To help you make a well-informed decision, here are key factors to review carefully.
Integration with existing systems
Make sure the software integrates seamlessly with your current platforms, such as ERP, CRM, or accounting tools. This integration prevents data silos and allows for smooth communication between systems, which keeps your workflows efficient and accurate.
Real-time stock management
Opt for software that provides up-to-date inventory tracking at any moment. Real-time data helps avoid costly mistakes like overstocking or stockouts, while giving you clear visibility to make faster, smarter inventory decisions.
Multi-channel support
If your business operates on multiple sales channels (e.g. marketplaces, online stores, or physical outlets) choose software that consolidates inventory management in one place. Centralized control reduces errors and simplifies order fulfillment across all platforms.
Cost and return on investment
Evaluate not only the upfront licensing fees but also costs related to implementation, training, and ongoing maintenance. Balance these expenses against the potential gains from improved operational efficiency and long-term savings to ensure a worthwhile investment.
Data security
Strong security measures are essential to protect your business and customer data from breaches. Look for features such as encryption, strict access controls, and disaster recovery plans to maintain data integrity and compliance with regulations.
Reporting and analytics
Comprehensive reporting tools allow you to track sales trends, stock levels, and product performance effectively. Leveraging these insights enables better forecasting and strategic decisions that drive growth and profitability.
Conclusion
Choosing the right eCommerce inventory management software helps you manage stock accurately and streamline operations. Features like real-time tracking, integration, and multi-channel support are key to boosting efficiency and customer satisfaction.
HashMicro offers a flexible system with powerful automation, real-time updates, and intelligent forecasting. These features reduce errors, save time, and improve profitability, making it a top choice for growing businesses.
Ready to take control of your inventory and optimize your eCommerce operations? Book a free demo with HashMicro today and discover how its powerful tools can transform your business.
FAQ About Ecommerce Inventory Management Software
-
What is the difference between perpetual and periodic inventory systems in eCommerce?
A perpetual inventory system provides real-time stock updates for high-volume eCommerce, while a periodic system updates less frequently, risking inaccuracies if not meticulously overseen.
-
Does ecommerce inventory management software help with returns and refunds?
Advanced inventory systems manage returns/refunds by tracking returned stock, updating levels automatically, and coordinating restocking efficiently. This reduces errors and improves customer experience.
-
Can ecommerce inventory software support international sales and shipping?
Yes, many platforms offer multi-currency and multi-location support, crucial for cross-border businesses. They integrate with global shipping for streamlined customs, taxes, and delivery tracking.
-
Is mobile access available for ecommerce inventory management software?
Modern inventory systems, via mobile interfaces or apps, enable users to remotely check stock, approve orders, and track shipments, boosting flexibility and real-time decisions.
-
How does AI improve ecommerce inventory management?
AI can forecast demand more accurately by analyzing historical trends, customer behavior, and seasonality. It helps automate reordering, detect anomalies, and optimize stock levels, ensuring businesses are always ready for fluctuations in demand.
