Top 22 Payroll Software in the Philippines for 2025

Are you having troubles with payroll issues? Missed cutoffs, miscalculated 13th-month pay, accidentally deviating from BIR tax tables, and SSS/PhilHealth contribution errors; all of which are among many problems that HR teams often face. One of the best solutions is to use payroll software to solve the problem.

However, there are so many payroll systems out there, so how do you know which one is the most suitable? But you need not worry, as HashMicro Payroll Software has everything a Filipino company might need, including a BIR-CAS system, automated payroll, and various tracking tools to ensure accurate salary each time.

We have also provided a curated list of the 22 Best Payroll Software in the Philippines 2025 in this article, in hopes that HR managers, business owners, finance teams, as well as important decison-makers can choose the right payroll system for their businesses.

What are the Risks of Having An Outdated Payroll Software?

Relying on manual or outdated payroll systems might seem cost-effective at first, but the long-term risks can heavily outweigh the savings. Here’s how older systems can impact your compliance, productivity, and visibility:

1. Compliance risks in changing laws

Labor and tax laws in the Philippines, such as those under the TRAIN Law, are frequently updated. Employers must keep up with contribution rate changes for SSS, PhilHealth, and Pag-IBIG, along with regulations on overtime, night differentials, and holiday pay.

Outdated payroll software, especially those relying on spreadsheets or legacy tools, often fail to reflect these changes in real time. This exposes companies to potential fines and audit issues, especially during BIR inspections or year-end reporting.

Tip: Cloud-based payroll software automatically applies the latest tax rules and contribution rates, reducing manual work and non-compliance risks.

2. Productivity losses from manual processing

Processing payroll manually doesn’t just consume time, it also increases the chances of critical errors. Inaccurate calculations on benefits or deductions can lead to employee dissatisfaction, retroactive adjustments, and even reputational damage.

Many HR teams report spending up to 3 business days on tax-related audits, payroll reconciliations, and filing; time that could otherwise be used for more strategic initiatives like performance reviews or recruitment planning.

Tip: With automation, HR teams can cut processing time by more than half and generate BIR Forms (2316, 1601C) in just a few clicks.

3. Limited visibility and lack of system integration

Legacy payroll systems often operate in silos. They lack real-time dashboards, detailed audit logs, or integrations with other HR tools like time tracking and leave management. This results in:

• Missed discrepancies in payroll runs
• Delays in approving timesheets or calculating night shift differentials
• Manual errors due to disconnected systems
• Modern payroll platforms centralize this data, offering complete visibility across
• employee records, tax compliance, and payouts in one interface.

Tip: Advanced payroll systems can integrate seamlessly with attendance, leave, and even recruitment modules.

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Guidelines for Picking A Payroll Software

Choosing the best payroll system in the Philippines is crucial. Compliance with local tax laws, government mandates, and employee benefits is complex and vital for business operations.

Here’s how Filipino enterprises can select the best payroll software for their needs:

1. Compliance with local regulations

The software must comply with payroll Philippines tax laws and regulations. It should also automatically update in response to changes in legislation to maintain compliance.

2. Scalability and flexibility

Look for the best payroll software that can scale with your business growth. Enterprises need the ability to handle a large and diverse employee base, multiple pay structures, and various employment types.

3. Integration capabilities

Choose software that integrates seamlessly with your existing HRIS systems, ERP systems, and other business tools. Integration ensures data consistency, reduces manual data entry, and streamlines business processes.

4. Functionalities

The ideal software should offer a comprehensive set of features, such as time and attendance management, benefits administration, tax filing, and reporting capabilities.

5. Ease of use

Prioritize software that’s easy for both HR and employees to use. Look for intuitive dashboards and self-service features that let employees access payslips, tax info, and attendance records on their own. Some companies have reported up to 40% fewer payroll inquiries after adopting self-service tools.

6. Data security and privacy

Choose a provider that takes data protection seriously. Payroll data includes sensitive information, so your software must offer strong security features like encryption, role-based access, and multi-factor authentication. Ask vendors about their compliance with data privacy laws in the Philippines.

7. Mobile access

With 83.8% of the Philippine population using the internet as of early 2025, mobile-friendly payroll systems have become essential. Mobile apps let employees access payroll anytime, while HR can manage tasks remotely. This ensures faster responses for field workers.

8. Support and training

Don’t overlook post-purchase support. Choose a vendor that provides clear onboarding, responsive customer service, and training materials. This ensures your team can use the system effectively and resolve issues quickly, especially during payroll cutoffs.

9. Vendor reputation and reliability

Consider feedback from current users in the Philippines about the software’s performance, reliability, and the vendor’s responsiveness to customer needs.

By following these key factors, you can narrow down your options and select the best payroll system Philippines that supports your business’s specific needs and long-term goals. 

22 Best Payroll Software in the Philippines for 2025

Looking for the perfect payroll system software? We’ve rounded up the 22 Best Payroll Software in the Philippines for 2025, handpicked for their power to simplify payroll, reduce errors, and keep your business running smoothly.

1. HashMicro Payroll Software 

HashMicro offers payroll software tailored for Philippine businesses, supporting automated salary calculation, BIR compliance, SSS/PhilHealth/Pag-IBIG deduction, and payslip generation. It also integrates fully with HRM and accounting modules for seamless workflows, and trusted by more than 2,000 businesses in Southeast Asia.

With unlimited user access, advanced scheduling tools, and role-based approvals, HashMicro is the best payroll system for mid-sized to large companies managing multi-branch payrolls. HashMicro also offers a free demo and expert consultation to help clients optimize payroll processing.

Key features:

1. Custom payslip management for daily and hourly employees
2. Automatic overtime calculation and inclusion in payroll
3. Built-in professional templates with full customization options
4. Fully localized tax calculation for SSS, PhilHealth, Pag-IBIG
5. Delegated payroll approval with automated follow-up notifications
6. Employee self-service for payroll access, leave requests, and profile updates
7. Mobile applications for all employees to access payslips
8. Automated reporting with detailed breakdowns for HR and compliance

Ideal user: HashMicro Payroll Software is suitable for Philippine firms seeking an all-in-one payroll management solution and can cover end-to-end business processes. This payroll software is also fully compliant to the Tax Reform for Acceleration and Inclusion (TRAIN) Law Philippines.

Pricing: The pricing scheme below provides detailed insight into your business’s needs. This vendor also offers transparent pricing and upfront costs, so you don’t need to worry about additional fees when using this software.

2. Sprout Solutions

Sprout Payroll is a cloud-based payroll management system designed for businesses of all sizes, offering accurate payroll calculations, government report generation, and compliance with BIR, PHIC, SSS, and Pag-IBIG regulations. It helps reduce payroll processing time while maintaining payroll accuracy.

Key features:

1. Payroll Outsourcing
2. Payroll Audit
3. Payroll-on-demand
4. Government benefits administration
5. SSS, PHIC, HDMF compliance services

Ideal user: Sprout Solutions is perfect for businesses looking to simplify processes and enhance efficiency.

Pricing: Starts from ₱5,000 per month.

3. ADP

The ADP Philippine payroll system is designed to serve companies of all sizes, from small to large corporations. The platform automates essential payroll tasks, including wage calculations, tax withholdings, and payments, ensuring timely and accurate employee compensation.

Additionally, ADP offers comprehensive tax filing services, managing deductions and filings for easy compliance with laws.

Key features:

1. Centralized benefits management for health plans, retirement, and statutory contributions
2. Integrated talent management for performance reviews
3. Built-in compliance checks for local tax laws and labor regulations
4. Automated payroll runs with multi-cycle options and customizable approval workflows
5. Analytics dashboards for headcount trends and expense forecasting

Ideal user: ADP cloud-based payroll system is particularly well-suited for businesses already using ADP suite of products or those looking to integrate their payroll with other business processes in a seamless ecosystem.

Pricing: ₱2,284.62 – ₱4,627.82 per month + ₱234.32 per employee

4. Ramco Payroll Software

Ramco Payroll is a unified global payroll platform for enterprises seeking automation, compliance, and innovation across multi-country operations. The platform ensures compliance across 150+ countries, supports multi-currency transactions, and integrates seamlessly with leading HCM systems like Workday and Oracle.

Key features:

1. Centralized console
2. DIY analytics tool for on-demand reporting and insights
3. Virtual assistant for payroll-related queries
4. Modern employee self-service portal
5. Multi-currency support

Ideal user: Ramco is ideal for multinational corporations seeking a comprehensive, integrated payroll solution

Pricing: Starting at $8.00 per month

5. PeopleStrong

PeopleStrong Payroll helps businesses manage payroll fully compliant with Philippine statutory requirements, including BIR and the Data Privacy Act. Its configurable engine adapts to regulatory changes, while integration capabilities allow seamless data sync across HR platforms.

The platform also supports payslip and tax report generation, employee self-service, and enterprise-grade security.

Key features:

1. Payslip, tax slip, and BIR Form 2316 generation
2. Report, bank, and journal voucher (JV) builder
3. Self-service portal with 24/7 access to payroll info
4. Income tax self-declaration via portal

Ideal user: PeopleStrong is ideal for Enterprises in the Philippines that are looking for a secure, adaptable payroll platform with strong compliance features and employee empowerment tools.

Pricing: Available upon request

6. Darwinbox

Darwinbox Payroll is the Philippines’ payroll software designed to streamline payroll processing in a company. It offers a fully digital and audit-ready payroll solution that simplifies processing by integrating real-time inputs such as leaves, overtime, night shift differentials, and 13th-month pay.

It ensures compliance with Philippine government agencies, including SSS, PhilHealth, Pag-IBIG, and BIR.

Key features:

1. Real-time sync with attendance, holidays, and CTC adjustments
2. Support for custom pay groups, bi-monthly, weekly, and off-cycle runs
3. Delta processing & re-processing options for post-cutoff changes
4. Trend analytics and cost-to-budget analysis
5. Employee self-service for payslips, tax declarations, and loan tracking

Ideal user: Darwinbox is ideal for businesses in the Philippines that aim to digitize payroll and stay compliant while giving employees a smooth self-service experience.

Pricing: Available upon request

7. JeonSoft

JeonSoft Payroll Suite (JPS) is an on-premise payroll management system in the Philippines that offers integrated HR, timekeeping, and payroll modules. It operates on a perpetual license, making it a one-time investment suitable for companies seeking long-term, self-hosted solutions.

JeonSoft has been a notable payroll software provider in the Philippines for over twenty years. It serves more than 1,350 clients and processes over 100 million pesos in payroll.

Key features:

1. Automated payroll processing that calculates salaries, deductions, and contributions
2. Time and attendance tracking with biometric integration and shift scheduling tools
3. Centralized HRIS for managing employee profiles, contracts, and employment history
4. Loan management module to track employee loans and balances
5. Payslip generation and distribution via email or employee portals

Ideal user: Jeonsoft is ideal for businesses seeking an efficient, scalable, and secure platform, though its pricing may be a consideration for smaller businesses.

Pricing: Available upon request

8. Payroll.PH

Payroll.ph is Philippine payroll system to simplify payroll management for companies and organizations. The system provides customizable settings for HR, timekeeping, and payroll.

It also makes payroll processing, including allowances, government contributions, taxes, and loans, into a quick, efficient process. With Payroll.ph, businesses can easily generate government reports, HR documents, payslips, certificates, and bank transmittals.

Key features:

1. Simplified payroll processing with automated salary, tax, and deduction calculations
2. One-click payroll management
3. Document management tools to store contracts, payslips, and compliance forms
4. Built-in HRIS for tracking employee data, job changes, and leave balances

Ideal user: Payroll.ph is ideal for Philippine-based businesses, especially SMEs, needing an integrated payroll system for efficient timekeeping, compliance, and HR management.

Pricing: Available upon request

9. Remote

Remote helps businesses manage and pay full-time and contract workers globally. It handles payroll, benefits, taxes, stock options, and compliance in over 50 countries. With a flat-rate price and no hidden fees, it helps you manage costs easily.

Its all-in-one platform simplifies payroll. You can run payroll, automate expense tracking, and create reports in one place for better efficiency.

Key features:

1. All-in-one payroll and HR management for distributed teams and remote-first companies
2. Local tax and compliance handling with automatic legal updates
3. Compensation and benefits tracking across currencies, employment types, and regions
4. Integrated HR tasks including onboarding, offboarding, and document signing
5. Global employment support for contractors and full-time hire

Ideal user: Remote is perfect for growing businesses looking to streamline their payroll processes and transition to a reliable payroll management software solution.

Pricing: Starts at $299 (₱17,515.42)/employee/month.

10. GreatDay HR 

GreatDay HR is a payroll system that helps businesses manage salaries easily and accurately. It lets payroll officers add custom salary components like bonuses, taxes, and deductions to fit company and employee needs.

For companies with different pay schedules, like in construction, it supports custom payroll periods such as weekly or bi-weekly. Employees can securely view their e-payslips anytime through their phones, protected by personal passwords.

Key features:

1. Automated payroll processing that calculates salaries, deductions, and contributions
2. Built-in tax and compliance tools to meet BIR, SSS, PhilHealth, and Pag-IBIG requirements
3. Secure payroll disbursement via direct bank integration or e-wallet transfer
4. Customizable payroll reports with analytics for cost tracking and payroll summaries

Ideal user: GreatDayHR is a good fit for companies seeking an all-in-one payroll management system.

Pricing: ₱70/employee/month for HRIS and payroll.

11. Deel

Deel is a global payroll management software that allows businesses to hire, pay, and manage employees in the Philippines without setting up a local entity. Moreover, it simplifies payroll, taxes, and HR compliance, so companies can easily navigate local regulations.

In addition, Deel automates tax documents, payroll, and benefits, and supports full payroll operations for companies with direct employees in the Philippines. It’s also good for BPOs whose scope of work is managing outsourcing payroll from other companies.

Key features:

1. Payroll management
2. Integrated HR tasks and payroll processes
3. Tax management
4. Compensation management
5. Multi-country support

Ideal user: Deel’s payroll system is ideal for businesses in the Philippines that value the flexibility of hiring global talent and are looking for an all-encompassing platform that addresses payroll, compliance, and payments across borders.

Pricing: Available upon request

12. FreshBooks

FreshBooks Payroll is primarily designed for U.S.-based businesses and does not offer direct payroll services for the Philippines.

However, Filipino businesses can still use FreshBooks for core accounting functions like invoicing, expense tracking, and financial reporting while integrating with third-party payroll solutions that handle local compliance, taxes, and employee benefits.

Key features:

1. Expense tracking
2. Invoicing and payment processing
3. Employee time tracking
4. Financial reporting

Ideal user: FreshBooks’ payroll software is ideal for businesses looking for flexibility in choosing their payroll provider while keeping their financial management integrated within one platform.

Pricing: $7.60–$24/month + add-ons ($11/user, payroll: $40 + $6/person).

13.  Rippling

Rippling is a payroll software that can run the entire payment process in minutes. Users can compare pay runs, track changes in gross pay and deductions, and approve with confidence. Custom pay types, such as bonuses and tips, can be set up on a recurring or one-time basis.

Rippling syncs payroll with benefits, expenses, and time tracking as a unified system. Approved hours, reimbursements, and deductions are updated in real time. It also integrates with accounting software like Xero, QuickBooks, and NetSuite.

Key features:

1. Automated salary calculations, tax withholdings, and filings
2. Time and Attendance Tracking
3. Benefits administration
4. Customizable Workflows
5. Employee Onboarding

Ideal user: Rippling employee payroll system is particularly beneficial for companies in the tech, consulting, and creative industries that operate globally and need to scale their workforce quickly and compliantly across borders.

Pricing: Available upon request

14. Papaya Global

Papaya Global is a cloud-based payroll system that manages global payroll, contractor payments, and vendor transactions with guaranteed landing dates. Its cross-border payment platform supports worker payouts worldwide while following local laws.

Through their Professional Employer Organization (PEO) services, businesses can hire and pay employees in the Philippines without establishing a local entity.

Key features:

1. Global payroll management
2. Benefits administration
3. Employer of Record (EOR) Services
4. Contractor payments
5. Real-time reporting and analytics

Ideal user: Papaya Global is ideal for companies with a globally distributed workforce, such as multinational corporations, businesses hiring remote workers, or those with international contractors.

Pricing: $15–$599/employee/month (contractors: $30, Enterprise EOR: $599)

15. Keka 

Keka is a comprehensive HR and payroll software designed to streamline employee management for businesses of all sizes. The platform offers a range of features, including automated payroll processing, time and attendance tracking, and employee self-service portals.

Keka connects with Xero, QuickBooks, and other tools as a fully integrated platform. Designed for teams of 30 to 500 employees, Keka simplifies payroll and multiple organizations within a single platform.

Key features:

1. Automated payroll processing
2. Employee self-service portal
3. Expense management
4. Reporting and analytics

Ideal user: Keka is suitable for small to medium-sized enterprises (SMEs), particularly in India

Pricing: $139–$222/month for up to 100 employees.

16. QuickBooks 

QuickBooks Payroll is an employee payroll system that can integrate with its accounting software. While QuickBooks Online is available in the Philippines, its integrated payroll services are primarily designed for U.S.-based businesses.

However, Filipino businesses can still utilize QuickBooks Online for comprehensive accounting needs and manage payroll through manual entries or by integrating third-party payroll solutions compatible with QuickBooks.

Key features:

1. Payroll management
2. Tax calculations
3. Benefits management
4. Employee self-service portal

Ideal user: QuickBooks Online Payroll is designed for small to midsize businesses, including accountants, financial professionals, hospitality services, construction firms, and trucking companies.

Pricing: ₱1,116–₱2,349/month

17. Allsec  

Allsec is a payroll system Philippines to simplify payroll and HR processes for businesses of all sizes. It features an extensive Employee Self-Service (ESS) portal, offering a low-touch, adaptive, and scalable platform suitable for various team sizes and worker profiles.

The system also integrates advanced technologies such as chatbots, Optical Character Recognition (OCR), Artificial Intelligence (AI), and Enterprise Resource Planning (ERP) interfaces.

Key features:

1. Automated payroll processing
2. Employee self-service portal
3. Benefits administration
4. Reporting and analytics

Ideal user: Allsec HR Payroll suits medium to large businesses with complex, multi-country payroll and compliance needs.

Pricing: Available upon request

18. Justworks

Justworks EOR is a global Employer of Record (EOR) solution that simplifies payroll, compliance, and HR operations for businesses hiring employees in the Philippines.

Justworks EOR helps companies manage end-to-end payroll in the Philippines by handling statutory deductions, payroll taxes, and employment contracts. It also supports businesses through onboarding to offboarding.

Key features:

1. End-to-end payroll management
2. Full support for 13th-month pay requirements
3. Handles onboarding, offboarding, and ongoing HR support
4. Assistance with payroll tax navigation
5. Local compliance with Philippine pay cycles and tax year

Ideal user: Justwork is ideal for Global businesses looking to hire employees in the Philippines.

Pricing: Contact Justworks for a quote.

19. ZingHR 

ZingHR’s cloud-based payroll software lets businesses outsource payroll processing so they can focus on growth. The platform integrates HR operations, payroll, benefits, and compliance with laws.

With Zero Touch Payroll, businesses can automate weekly, daily, or hourly salary payments. The system also offers real-time payroll data access and automated tax filing. It offers full data security and complies with local laws.

Key features:

1. Automated payroll processing
2. Compliance management
3. Time and attendance management
4. Analytics and reporting

Ideal user: ZingHR is ideal for businesses that need payroll management and HR tools like talent management and implementation evaluation.

Pricing: Starts at $5.50 per employee per month and a customized quote.

20. Multiplier

Multiplier is a global PEO and payroll solution that helps businesses onboard, pay, and manage international employees with full compliance and localized benefits.

It simplifies international hiring and workforce management by combining payroll, onboarding, benefits, and compliance into one centralized platform.

Key features:

1. Simplified leave, expense, and activity tracking
2. Global IT and equipment provisioning
3. In-house legal and tax experts
4. 24/7 multilingual customer support

Ideal user: Multiplier is ideal for Fast-growing companies looking to hire and manage international teams quickly, without dealing with the legal, tax, and payroll complexities of setting up local entities.

Pricing: Starting from $40 per month (freelance) and $400 (full-time)

21. Gusto

Gusto is a cloud-based HR system that automates payroll and integrates with benefits like health insurance and pensions. This way, businesses can manage everything in one place.

However, Gusto mainly serves U.S. businesses and doesn’t offer complete payroll services in the Philippines. Still, it helps U.S. companies hire and pay international workers, including those in the Philippines.

Key features:

1. Tax Filing and Compliance
2. Employee Self-Service
3. Payroll Reports and Analytics

Ideal user: Gusto online payroll is well-suited for businesses in the Philippines seeking a payroll solution that is compliant with local regulations and easy to use.

Pricing: $35–$180/month + $6–$22/person.

22. Breathe 

Breathe is a modern HR and payroll system Philippines designed to simplify and streamline people management for small businesses. With its user-friendly interface and cloud-based platform, Breathe helps businesses manage key HR tasks, including employee records, payroll, Performance, and leave management.

Key features:

1. Commitment-free plans
2. Dedicated service and support
3. Payroll Entry
4. Tax Calculation

Ideal user: Breathe is suitable for small and medium businesses looking to simplify processes and enhance efficiency in their payroll system.

Pricing: £18–£500/month based on company size, with £10 add-ons.

What are the Benefits of Using Payroll Software?

Here are the key benefits of using the best payroll software in Philippines to enhance your payroll management:

1. Improve efficiency and accuracy

Saves time and effort by automating payroll, reducing errors, and ensuring timely, accurate employee payments.

2. Regulatory compliance

Keeps up-to-date with tax laws and regulations, reducing the risk of penalties for non-compliance.

3. Data safety

It offers secure storage and handling of sensitive employee financial information.

4. Cost-control

This lowers the cost of processing payroll by reducing the need for a large payroll department.

5. Payroll Transparency

Often includes employee portals where workers can view their pay slips and tax information and request time off, enhancing transparency and communication.

A payroll system software is valuable for businesses looking to optimize their payroll processes, improve accuracy, and ensure compliance while providing a better employee experience.

Conclusion

Selecting the best payroll software is a critical decision for enterprises in the Philippines. With the vast array of options available, it is essential to carefully assess each software’s features against your business to find the perfect match.

HashMicro is one of the best payroll system software available to Philippine enterprises. Its comprehensive features, scalability, and user-friendly interface make it a choice for businesses looking to streamline payroll processes efficiently.

Witness firsthand how HashMicro can streamline payroll processes and support your business’s growth. Don’t miss this opportunity to elevate your payroll system—try the free demo now!

FAQ About Payroll Software

• How does the payroll system work in the Philippines?

  In the Philippines, payroll operates monthly, varying by employer and industry. Employers must issue wages every two weeks, with intervals not exceeding 16 days. Additionally, the country mandates a 13th-month pay benefit, providing employees with an extra month’s salary as a bonus.

• What are the payroll rules in the Philippines?

  Employers in the Philippines must pay their employees bi-weekly or twice a month, with intervals of no more than 16 days. The law prohibits employers from making monthly-only payments but does allow weekly payments if desired.

• What is HR and payroll system?

  Human resources primarily focuses on managing employee relations, while payroll handles employees’ financial compensation and the payment process. Although these departments have separate roles, they share overlapping responsibilities.

• Is payroll part of bookkeeping?

  Payroll and bookkeeping are different. Payroll involves paying employees, while bookkeeping involves recording all financial transactions in a business.