It’s 11.11 sale day. Your Shopee listing shows ‘100 units available,’ but your actual warehouse stock? Only 23 pieces. Within minutes, you’ve oversold 77 orders. Now you’re facing mass cancellations, a ‘Late Shipment’ penalty that tanks your seller rating, and 77 angry customers flooding your chat with complaints. One flash sale just cost you ₱150,000 in lost revenue and months of reputation building. Sound painfully familiar?
E-Commerce Inventory Management Software is a specialized platform built for online sellers who juggle multiple sales channels simultaneously. Unlike traditional inventory systems designed for single warehouses, e-commerce inventory software synchronizes your stock across all e-commerce platforms in real-time.
To help you navigate these challenges, this guide highlights the 20 best e-commerce inventory management software options for 2026, giving you a clear overview before exploring each solution in detail.
Key Takeaways
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What is E-Commerce Inventory Management Software?
E-Commerce Inventory Management Solution is a special tool designed to help online businesses manage their inventory effectively. This software provides real-time stock tracking and updates, ensuring businesses have accurate and up-to-date information about their inventory.
Additionally, this software allows businesses to manage multiple warehouses and sales channels smoothly, providing a centralized platform to oversee all inventory-related activities. You can avoid common issues like stockouts and overstocking by implementing a robust inventory management solution.
Which Software Fits Your E-Commerce Business?
Not all sellers need the same features. Find your category:
Solo Seller / Home-Based Business
- Profile: 1-2 marketplaces, <500 SKUs, no warehouse staff
- Needs: Simple interface, mobile app, affordable pricing
- Recommended: Zoho Inventory, Veeqo, inFlow
- Budget: Free – ₱1,500/month
Growing Brand / SME
- Profile: 3-5 channels, 500-5,000 SKUs, small team
- Needs: Multi-channel sync, automation, basic analytics
- Recommended: Cin7, TradeGecko, Ordoro
- Budget: ₱3,000 – ₱15,000/month
Enterprise / Multi-Brand
- Profile: Omnichannel (online + offline), 5,000+ SKUs, multiple warehouses
- Needs: Full ERP integration, advanced forecasting, customization
- Recommended: HashMicro, NetSuite, SAP Business One
- Budget: ₱25,000+/month
Dropshipper
- Profile: No physical inventory, relies on supplier stock
- Needs: Supplier stock sync, automated order forwarding
- Recommended: DSers, Inventory Source, Spark Shipping
- Budget: ₱1,000 – ₱5,000/month
E-Commerce Platform Integration Guide
Choosing inventory software isn’t just about features—it’s about whether it actually connects to where you sell. Here’s what to look for in Philippine marketplace integrations:
Shopee Integration Must-Haves:
- Real-time stock sync (not just hourly updates)
- Automatic order import and status updates
- Shopee Ads inventory reservation
- Flash sale stock allocation
- Shopee Xpress shipping integration
- Seller Center API compliance
Lazada Integration Must-Haves:
- LazMall and regular seller support
- Lazada Fulfillment by Lazada (FBL) compatibility
- Multi-warehouse sync for Lazada regional hubs
- Lazada Sponsored Products inventory allocation
- Automatic shipping label generation
TikTok Shop Integration Must-Haves:
- Live selling inventory reservation
- Affiliate product stock management
- TikTok Fulfillment integration
- Content-to-commerce tracking (which videos drive which sales)
7 Critical E-Commerce Inventory Metrics Your Software Must Track
Unlike traditional retail, e-commerce requires specific metrics that account for multi-channel selling, high return rates, and marketplace performance scores:
| Metric | What It Measures | Why It Matters |
|---|---|---|
| Sell-Through Rate by Channel | Percentage of inventory sold within a specific period per platform | Identifies which marketplace moves products the fastest |
| Stockout Rate | Percentage of time products are marked as out of stock | Directly impacts seller ratings on Shopee and Lazada |
| Order Cancellation Rate | Percentage of orders cancelled due to inventory issues | Rates above 2% may trigger marketplace penalties |
| Return-to-Stock Rate | Percentage of returned items that can be resold | Online return rates are significantly higher than offline retail |
| Dead Stock Percentage | Inventory not sold for more than 90 days | Storage fees reduce margins, especially for FBL sellers |
| Inventory Sync Latency | Time delay between a sale and stock level updates | Delays over five minutes increase the risk of overselling |
| Pre-Order Fulfillment Rate | Percentage of pre-orders fulfilled on the promised date | Critical for limited-edition and hype product sellers |
Types of Inventory Management Software
Understanding the different types of inventory management software helps you choose a system that fits your operational needs. Several types of inventory solutions can be integrated with e-commerce software:
- Just-in-Time (JIT) management: Businesses only order goods when needed to reduce storage costs.
- Bulk shipping: It is suitable for businesses with high sales volume, allowing them to order and ship goods in large quantities for cost efficiency.
- Perpetual and periodic strategies: Perpetual systems continuously update stock in real-time with each transaction, while periodic systems update at specific intervals.
Each strategy has advantages and disadvantages, which can be adjusted to fit the business’s needs. This way, companies can improve customer satisfaction, optimize operational processes, and increase profitability.
20 Best E-Commerce Inventory Management Software
Proper e-commerce inventory management is key to smoothly managing stock, reducing costs, and increasing efficiency. However, choosing the right one can be challenging with so many software options available.
That’s why we have compiled a list of the 20 best e-commerce inventory management software options to help you optimize your business operations.
1. HashMicro
HashMicro is a leading ERP solutions provider in the Philippines. It offers various products to help businesses improve their e-commerce efficiency. HashMicro is known for its flexible, fully integrated systems that meet the needs of businesses in various industries.
With advanced technology and support from expert teams, HashMicro ensures that every implementation runs smoothly and delivers optimal results. The company is also known for its continuous commitment to innovation, which keeps businesses competitive in a dynamic market.
If your business is having trouble managing inventory for various e-commerce channels, HashMicro has the perfect solution. With a free demo and live consultation, you can find the best way to smooth inventory management for your business.
HashMicro E-Commerce Inventory Management Software helps optimize inventory management, reduce the risk of stockouts or overstocking, improve operational efficiency, and ensure accurate data for better and faster decision-making.
This software has comprehensive features such as:
- RFID warehouse rack stock in-out automation: Automates real-time tracking of stock movements, reducing manual errors and improving warehouse accuracy.
- Stock forecasting: Predicts future demand to help you reorder proactively and maintain optimal inventory levels.
- Fast-moving and slow-moving stock analysis: Identifies product turnover speed, helping you prioritize procurement and clear slow-moving items strategically.
- Racking capacity with putaway strategy: Guides warehouse teams on item placement to maximize space and simplify stock retrieval.
- Pick, pack, and delivery 3-step route warehousing: Streamlines order fulfillment by organizing picking, packing, and delivery into an efficient three-step workflow.
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Looking to simplify your online store’s inventory management? Consider exploring HashMicro’s E-Commerce Inventory Management Software. With features like real-time tracking, automated stock updates, and smooth integration with your existing platform, it can help you stay organized and avoid costly mistakes.
If you’re interested in making your inventory process more efficient and less stressful, click the banner below to learn more about how this solution might be a great fit for your business.
2. ClickUp
ClickUp is a versatile project management platform that includes features for equipment maintenance. It allows teams to plan, schedule, and monitor maintenance tasks and provides an intuitive dashboard for monitoring equipment performance and status in real-time.
ClickUp inventory management app has the following features:
- ClickUp Views: Board, List, Gantt, Calendar
- ClickUp Automation
- ClickUp AI support
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3. inFlow
inFlow offers inventory management software that also supports equipment maintenance. With inFlow, users can track equipment conditions, schedule routine maintenance, and monitor usage to ensure operational efficiency and reduce the risk of sudden breakdowns.
Cloud inventory software by inFlow has various features, such as the following:
- Centralized Inventory Database
- Inventory Level Dashboards
- Stock History Reporting
- Inventory Forecasting
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4. ShipBob
ShipBob is known as a logistics and inventory management platform, but it also supports equipment maintenance needs. The software helps companies manage and schedule maintenance of logistics and warehousing assets, ensuring all equipment is in good working order.
Inventory management software by ShipBop has the following features:
- eCommerce Integrations
- Customer Porta
- KPIs Dashboards
- Custom Reports
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5. Veeqo
Veeqo is an inventory and order management solution that also offers features for equipment maintenance. With Veeqo, companies can automate maintenance schedules, track equipment conditions, and manage spare parts to ensure smooth and efficient operations.
E-commerce inventory software by Veeqo has features such as the following:
- Centralized Inventory Database
- eCommerce Integrations
- Order management
- Low stock alerts
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6. Cin7 
Cin7 is a comprehensive inventory management platform that includes equipment maintenance features. This software allows tracking equipment performance, scheduling maintenance, and managing assets to reduce downtime and improve operational efficiency.
The following are the features of Cin7 stock management software:
- Centralized Inventory Database
- Inventory Level Dashboards
- Stock History Reporting
- Low Stock Notifications
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Read more: Top Construction Inventory Management Software
7. Fishbowl
Fishbowl offers both on-premise and cloud-based inventory management solutions for various types of businesses, including eCommerce, brick-and-mortar, and manufacturing. It helps accurately track inventory, customize labels, automate processes, and integrate payments from POS and eCommerce platforms into accounting records.
Here are the features of Fishbowl inventory software:
- Inventory tracking and management
- Order management
- Real-time inventory updates
- Mobile access
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8. Helcim
Helcim is a payment and business management platform that also supports equipment maintenance. Known primarily for payment solutions, Helcim helps in managing business equipment, including scheduling and tracking maintenance.
Helcim inventory management application has the following features:
- Payment processing
- Inventory tracking
- Customer relationship management (CRM)
- Reporting and analytics
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9. Sage Inventory Advisor
Sage Inventory Advisor offers inventory management solutions with equipment maintenance features. With Sage, users can manage maintenance schedules, monitor asset conditions, and optimize equipment usage for maximum efficiency.
The following are the features of Sage Inventory Advisor:
- Inventory optimization
- Demand forecasting
- Supplier management
- Real-time stock tracking
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10. Netsuite
Netsuite Inventory Management is part of the Netsuite ERP suite, which offers equipment maintenance features. This software helps with asset tracking, maintenance scheduling, and performance analysis to ensure equipment is always in top condition.
Here are the features of Netsuite inventory management software:
- Inventory control and optimization
- Order fulfillment
- Demand planning
- Multi-location management
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11. Zoho
Zoho Inventory is an inventory management solution integrated with equipment maintenance features. With Zoho, users can schedule maintenance, track equipment conditions, and ensure smooth operations through preventive maintenance.
E-commerce inventory software by Zoho has features such as the following:
- Multi-channel inventory management
- Order management
- Warehouse management
- Integrations with various e-commerce platforms
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12. Linnworks
Linnworks is an e-commerce and inventory management platform that supports equipment maintenance. This software allows maintenance scheduling, tracking equipment conditions, and managing spare parts to reduce downtime.
The following are the features of Linnworks inventory:
- Multi-channel order management
- Inventory control
- Automation tools
- Reporting and analytics
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13. Lightspeed
Lightspeed is a POS and inventory management solution that includes equipment maintenance features. This software helps retailers manage asset maintenance, schedule services, and ensure equipment is always ready to use.
Lightspeed e-commerce management software has the following features:
- POS integration
- Real-time inventory tracking
- Asset maintenance scheduling
- Comprehensive reporting tools
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14. Threecolts
Threecolts is an inventory and order management platform for equipment maintenance. Users can schedule maintenance, track equipment performance, and easily manage spare parts with Threecolts.
Here are the features of the Threecolts inventory app:
- Inventory management
- Order tracking
- Maintenance scheduling
- Spare parts management
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15. Trunk
Trunk provides an integrated inventory management solution with equipment maintenance features. This software helps businesses schedule maintenance, track asset conditions, and ensure all equipment functions optimally.
Inventory Management App Trunk has features such as the following:
- Real-time inventory sync
- Multi-channel support
- Maintenance scheduling
- Asset condition tracking
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16. SkuVault
SkuVault is an inventory management solution that offers equipment maintenance features. Users can manage maintenance schedules, monitor equipment conditions, and reduce the risk of breakdowns through preventive maintenance.
Here are the features of SkuVault inventory management software:
- Inventory tracking
- Order management
- Preventive maintenance scheduling
- Equipment condition monitoring
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17. Finale Inventory
Finale Inventory offers an inventory management solution with support for equipment maintenance. This software enables tracking equipment performance, scheduling maintenance, and managing spare parts for efficient operations.
Finale E-commerce Inventory Software has the following features:
- Inventory control
- Order management
- Barcode scanning
- Equipment performance tracking
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18. SellerCloud
SellerCloud is an e-commerce management platform with equipment maintenance features. Users can schedule maintenance, track equipment conditions, and ensure all assets are in good condition.
Inventory management software by SellerCloud has the following features:
- Multi-channel management
- Inventory control
- Order processing
- Equipment maintenance scheduling
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19. Katana
Katana is a manufacturing inventory software, making it suitable for e-commerce as well. It offers real-time product visibility, end-to-end traceability, features like purchase, sales order, production, and warehouse management, as well as real-time scheduling and master planning capabilities.
Here are the features of Katana inventory management software for ecommerce:
- Production planning
- Inventory management
- Shop floor control
- Asset maintenance management
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20. Shiphero
Shiphero is a logistics management platform that offers equipment maintenance features. This software helps companies manage and schedule the maintenance of logistical assets, ensuring all equipment functions well and efficiently.
Shiphero inventory stock software has the following features:
- Shipping management
- Inventory tracking
- Order fulfillment
- Logistics asset maintenance
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The Benefit of E-Commerce Inventory Management Software
Using the right inventory management software for e-commerce is not just an operational improvement; it’s a strategic investment for your business. This software offers various benefits that can change how you manage inventory, streamline operations, and boost overall efficiency.
Here are some benefits you will get:
- Marketplace Penalty Avoidance
Avoid costly penalties from Shopee and Lazada. Late shipment rates above 5% can demote your seller tier, reduce visibility, and even suspend your store. E-commerce inventory software ensures you never promise stock you don’t have, keeping your fulfillment rate above 95%.
- Flash Sale Readiness
Prepare for traffic spikes during 11.11, 12.12, and Payday Sales without crashing. The software automatically reserves stock for promotional events while preventing overselling during peak traffic. - Multi-Channel Price Sync
Maintain consistent pricing across all platforms. When you run a promo on Shopee, automatically reflect the same discount on Lazada to avoid customer complaints about price discrepancies. - Social Commerce Integration
Manage inventory for Facebook Live selling, Instagram Shopping, and TikTok Shop from one dashboard. When you sell 50 items during a live session, all channels update instantly. - COD Order Management
Handle Cash-on-Delivery orders efficiently—the dominant payment method in the Philippines (over 60% of transactions). Track COD success rates, manage returns from failed deliveries, and reconcile payments automatically. - Returns & Refund Processing
E-commerce has return rates of 20-30%. The software tracks returned items, updates stock when items pass quality check, and flags damaged goods for disposal—preventing returned inventory from becoming dead stock.
Challenges of Managing E-Commerce Inventory Software
Ecommerce inventory management software is crucial for online retailers to effectively manage their inventory. However, there are various challenges associated with using this type of software.
- The software should be capable of integrating with various sales channels, including marketplaces like Amazon, eBay, and Walmart, as well as social media platforms like Facebook and Instagram. However, complex integrations can be a significant hurdle, making it challenging to synchronize sales and inventory across all platforms.
- The software must be able to manage a substantial number of products, SKUs (stock-keeping units), and variations. This can pose a challenge for certain inventory management systems that may find it difficult to keep pace with the volume of items that require tracking, leading to inaccurate stock information.
- The software must support real-time inventory updates. Online retailers need to monitor their inventory levels in real-time to prevent overselling products or running out of stock. This necessitates a high degree of accuracy and reliability from the inventory management software.
Key Factors to Consider Before Choosing E-Commerce Inventory Management Software
Choosing the right e-commerce inventory management software is a crucial decision that can significantly impact the efficiency and success of your business. Here are some key factors to consider before making a decision:
- Extensive integration with various modules and systems: Ensure the software you choose can integrate with your e-commerce platform and other systems you already use, such as ERP, CRM, or accounting software. Good integration ensures a smooth workflow and consistent data across all systems.
- Real-time stock management features: Software that provides real-time stock tracking helps you avoid overstocking and stockouts and gives better visibility of your inventory.
- Multi-channel support: If your business operates across various sales channels (e.g., marketplace, online store, physical store), ensure the software supports inventory management for all these channels centrally.
- Cost and ROI: Evaluate the total cost of ownership (TCO) of the software, including licensing, implementation, training, and maintenance costs. Also, consider the potential return on investment (ROI) through improved operational efficiency and cost savings.
- Data security: Ensure the software has strong security measures to protect your business and customer data. These measures include data encryption, access controls, and disaster recovery.
- Reporting and analytics: Good software should offer comprehensive reporting and analytics features. The ability to analyze sales data, stock trends, and product performance aids in strategic decision-making.
By considering these factors, you can make a more informed decision and choose the e-commerce inventory management software that best fits your business needs and goals.
“E-commerce inventory management software helps online businesses maintain real-time stock accuracy, prevent losses, and keep customer demand consistently fulfilled.”
— Darryl Esguerra, Inventory & Logistics Consultant
Conclusion
Choosing the right inventory management software is essential to support the complex operations of businesses in the Philippines. The software must address various needs and challenges in inventory management and ensure smooth operations.
Investing in the right inventory management software can be a crucial factor in achieving long-term success. One of the best options in the Philippines is HashMicro Inventory Management Software, which offers comprehensive features and many advantages.
Schedule a consultation and a free demo with our professional team to discover how HashMicro E-Commerce Inventory Management Software is the right solution for your business!
FAQ About E-Commerce Inventory Management Software
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How does e-commerce affect inventory management?
E-commerce increases the complexity and volume of inventory management, requiring accurate, real-time stock data to avoid stockouts and overstocking. Since online businesses often sell across multiple channels and fulfillment centers, a robust inventory management system is essential to synchronize stock levels, streamline order processing, and meet customer expectations efficiently.
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How to manage inventory in e-commerce?
Effective e-commerce inventory management involves using inventory software to track stock in real time and integrate it with sales channels. Businesses should apply demand forecasting, manage multiple warehouses efficiently, coordinate closely with suppliers, and conduct regular audits to support smooth order fulfillment and returns.
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What is the role of inventory management in the e-commerce supply chain?
Inventory management plays a critical role in the e-commerce supply chain by maintaining optimal stock levels, reducing storage costs, speeding up order fulfillment, and improving demand forecasting. It also helps prevent stock shortages, strengthens supplier coordination, and improves overall operational accuracy.
