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Top 10 Best Accounting Software for Multiple Businesses in 2025

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Managing finances for multiple businesses can be overwhelming; balancing books, tracking expenses, and staying compliant often leads to errors and inefficiencies. Multi-company accounting software centralizes operations to enable accurate reporting and regulatory compliance, helping you reduce errors and unlock growth.

The global accounting software market is projected to grow at a 10% CAGR from 2024 to 2032, signaling rapid industry adoption. Businesses that delay shifting to modern, cloud-based solutions risk falling behind their competitors, who are already optimizing their financial operations.

This article simplifies your decision-making by compiling the top 10 multi-company accounting software for 2025, from leaders like HashMicro and NetSuite to renowned names such as Sage and QuickBooks. Ready to see the fit? Book a free demo of HashMicro today.

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    What Is Multi Company Accounting Software?

    Accounting software for multiple businesses is a platform that centralizes financial operations for several companies under one system. It consolidates financial data, manages intercompany transactions, and supports multi-entity reporting, making it easier for businesses to maintain accurate records across all entities.

    Multi-company accounting software also provides automated workflows, real-time data access, role-based permissions, and multi-currency support. These features improve compliance, streamline consolidation, and reduce manual errors—allowing businesses to scale and manage multiple entities without juggling separate accounting systems.

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    Can One Accounting Software Be Used for Multiple Businesses?

    A single accounting software can manage multiple businesses. However, multi-entity accounting software is designed specifically to address the needs of various entities within one platform. The software streamlines accounting operations, ensuring accurate financial data consolidation and improved efficiency.

    Additionally, multi-company accounting software enables businesses to generate consolidated financial statements, analyze retained earnings, calculate goodwill, and provide a unified view of financial health. Companies can enhance oversight, reduce manual errors, and improve decision-making processes, supporting better financial management across all business units.

    Why Do Businesses That Manage Multiple Entities Need Specialized Software?

    Managing multiple entities adds extra layers of financial and compliance complexity. Here’s why specialized software becomes essential in handling it efficiently:

    1. Automation of repetitive tasks: Processes such as payroll, invoicing, and expense tracking can be automated and applied across entities without duplication of work.
    2. Built-in compliance support: It supports multiple tax laws, currencies, and reporting standards, reducing the risk of non-compliance across different entities.
    3. Reduced human error: Automation, built-in validation, and compliance tools help prevent costly financial mistakes that commonly occur with manual spreadsheets.
    4. Scales with business growth: The system can accommodate new entities, higher transaction volumes, and international expansion without significant rework.
    5. Centralized financial management: A single platform can manage multiple entities while keeping each entity’s records separate and organized.
    6. Automatic consolidated reporting: The software can generate consolidated financial statements to provide a clear overview of total business performance.

    Top 10 Accounting Software for Multiple Businesses

    Navigating the financial landscape of multiple businesses requires robust accounting software. Therefore, we’ve compiled a list of the top 10 accounting software for multiple businesses in Malaysia. 

    • HashMicro: ERP-based accounting software with automation and multi-company support.
    • NetSuite: Cloud accounting for automating multi-entity financial operations.
    • Sage: Real-time multi-business financial management in one platform.
    • QuickBooks: Easy-to-use software for handling multiple business finances.
    • Wave: Free, cloud-based tool for simple multi-entity accounting.
    • Zoho Books: Smart, automated accounting for multiple businesses.
    • Acumatica: Customizable multi-entity accounting with cloud access.
    • FreshBooks: Invoicing-focused software for small multi-business use.
    • Xero: Multi-currency accounting with cloud-based automation.
    • SoftLedger: Real-time, automated accounting for complex entities.

    1. HashMicro Accounting Software for Multiple Businesses

    HashMicro Accounting Software for Multiple Businesses

    The best overall option for Malaysian businesses looking for comprehensive, localized, and scalable ERP software.

    HashMicro Accounting Software is a robust cloud-based solution designed to streamline financial operations for multiple businesses. The system integrates various financial processes, ensuring accuracy, efficiency, and real-time financial visibility across different business units.

    HashMicro offers a free product tour and consultation without any commitments, allowing potential users to explore the software’s features and capabilities. This approach helps businesses make informed decisions by allowing them to experience firsthand how the software can meet their needs.

    HashMicro has earned the trust of various prominent industries, including Forbes, Bank of China, and Abbott. This trust is built on the software’s reliability, comprehensive features, and proven track record in enhancing financial management across diverse sectors.

    Why we picked it: We picked HashMicro for its end-to-end solution, which seamlessly integrates various business processes and provides a unified platform for comprehensive financial management.

    Features:

    1. Bank Integrations & Auto Reconciliation: HashMicro features seamless bank integrations and automatic reconciliation, allowing businesses to streamline financial processes and ensure accuracy by automatically matching transactions with bank statements.
    2. Budget Forecast: This feature enables businesses to predict future financial performance, helping in strategic planning and ensuring effective allocation of resources for maximum profitability.
    3. Multi-company with Inter-company Transaction and Consolidation: HashMicro’s multi-company feature supports inter-company transactions and consolidation, enabling seamless financial management across multiple entities.
    4. Multi-Level Analytical: This feature provides detailed insights into financial data across various levels, helping businesses compare financial statements per project, branch, or department for more informed decision-making.
    5. 3-Way Matching: This feature ensures that purchase orders, receipts, and invoices are accurately matched, minimizing errors and fraud while ensuring that payments are only made for received goods.
    6. Budget S-Curve: HashMicro allows businesses to visualize budget allocations and expenditures over time, tracking financial performance against planned budgets and making necessary adjustments.
    7. Financial Ratio Analysis: This feature helps businesses evaluate their financial health by analyzing key ratios such as liquidity, profitability, and solvency, supporting better financial management decisions.
    Pros Cons
    • User-friendly interface.
    • Automated currency update.
    • Seamless integration with other business applications.
    • Compliance with the Inland Revenue Board Malaysia (IRBM).
    • Unlimited users without additional user fees.
    • Lifetime after-sales service and maintenance.
    • Features cater to large enterprises, which can overwhelm businesses with more straightforward needs.
    • The implementation process can vary depending on the business’s requirements.

    “Handling multiple companies is far easier when financial data lives in one structured platform. It helps leaders make faster decisions and eliminates the noise of disconnected systems.”

    — Angela Tan, Regional Manager

    To learn more about HashMicro Accounting Software, click the banner below to view the detailed pricing scheme. Discover the affordable plans tailored to meet the needs of multiple businesses and invest in robust financial management software.

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    2. NetSuite 

    netsuite

    NetSuite is a cloud-based accounting software for multiple clients designed to automate and streamline accounting processes. Its comprehensive features provide real-time insights, enhance accuracy, and improve overall financial efficiency for businesses of all sizes.

    Why we picked it: We chose NetSuite for its comprehensive cloud-based solution, which automates accounting processes and provides real-time financial insights.

    Features:

    1. Accounts receivable and payable
    2. Budgeting and forecasting
    3. Multi-currency management
    4. Tax management
    5. Real-time financial reporting
    Pros Cons
    • Cloud-based access allows users to work from anywhere with an internet connection.
    • NetSuite is highly scalable and seamlessly integrates with other systems.
    • Provides multiple tiers of customer support, including 24/7 support for premium and advanced packages.
    • The cost depends on the number of users, the core platform, and optional modules.
    • NetSuite has a steep learning curve, which can slow down user adoption.
    • The interface could be more intuitive, and some users find it outdated compared to other systems.

    3. Sage Multi-company Accounting Software

    Sage Multi-company Accounting Software

    Sage Multi-company Accounting Software is designed to manage the financial operations of multiple businesses within a single platform. It enhances efficiency by offering real-time financial insights, analyzing retained earnings, and seamless integration across business entities.

    Why we picked it: We picked Sage for its robust features that efficiently handle the financial operations of multiple businesses within a single platform.

    Features:

    1. Invoicing and billing
    2. Expense tracking
    3. Cash flow management
    4. Multi-currency support
    5. Financial reporting
    Pros Cons
    • Easy-to-navigate user interface.
    • Responsive and helpful customer support, which is crucial for resolving issues quickly.
    • It integrates well with other business tools and platforms.
    • Setting up Sage Accounting can be challenging and time-consuming.
    • Sage’s extensive features require businesses to undergo training to utilize them fully.
    • There may be concerns regarding safety and confidentiality.

    4. QuickBooks

    QuickBooks

    QuickBooks is a versatile accounting software for multiple businesses, providing a user-friendly interface and comprehensive features to manage finances efficiently. This accounting software for multiple clients supports various financial tasks, including invoicing, calculating goodwill, and payroll, ensuring streamlined operations.

    Why we picked it: We chose QuickBooks multi-company accounting software for its user-friendly interface and comprehensive features, which support efficient financial management for multiple businesses.

    Features:

    1. Expense tracking
    2. Multi-currency transactions
    3. Automated notifications and approvals
    4. Task management
    5. Financial reporting
    Pros Cons
    • User-friendly interface.
    • It integrates with other systems and allows for customization with third-party applications.
    • The mobile app enables users to manage their finances on the go.
    • Lacks industry-specific features such as lot tracking, e-commerce integration, and barcode scanning.
    • Some users have reported instability and system crashes.
    • As an online platform, QuickBooks may present potential security risks.

    5. Wave Accounting Software for Multiple Businesses

    Wave Accounting Software for Multiple BusinessesWave Accounting Software for Multiple Businesses offers a free, cloud-based solution tailored for businesses in Malaysia. This accounting software for multiple clients includes invoicing, expense tracking, and financial reporting, making it one of the best accounting software for various entities.

    Why we picked it: We picked Wave for its cloud-based solution that offers essential financial management tools tailored for small enterprises and freelancers.

    Features:

    1. Expense tracking
    2. Bank reconciliation
    3. Customizable invoices
    4. Tax preparation
    5. Analytics and reporting
    Pros Cons
    • The software is designed to be easy to use.
    • Wave Accounting supports multi-currency transactions.
    • It integrates seamlessly with various third-party tools.
    • It lacks advanced features that larger businesses might require.
    • Wave Accounting does not offer automatic bank reconciliation.
    • Payroll management is region-specific, which may not be suitable for companies with employees in various locations.

    6. Zoho Books

    Zoho Books

    Zoho Books is an intuitive multi-company accounting software designed to simplify financial management for businesses. Its comprehensive features, including automated workflows and real-time financial insights, make it a top choice for accounting software for multiple companies.

    Why we picked it: We chose Zoho Books for its intuitive design and automated workflows, which make it ideal for simplifying financial management for multiple business entities.

    Features:

    1. Bank reconciliation
    2. E-invoicing
    3. Project management
    4. Inventory management
    5. Financial reporting
    Pros Cons
    • Intuitive and easy-to-use interface
    • It allows for extensive customization options.
    • It supports global payments, which is an advantage for businesses with international clients.
    • It does not automatically connect to banking accounts, requiring manual reconciliation.
    • Advanced customization for reports and invoices is limited.
    • Some users have reported inconsistent support, noting that some staff lack knowledge about advanced features.

    7. Acumatica Multi-Entity Accounting Software

    Acumatica Multi-Entity Accounting Software

    Acumatica provides a robust platform for managing finances across various business entities. This multi-entity accounting software ensures accurate financial reporting and seamless integration, making it one of the best accounting software for multiple entities.

    Why we picked it: This multi-company accounting software has robust platform ensures accurate financial reporting and seamless integration across various business entities.

    Features:

    1. Bank reconciliation
    2. Ledgers and accounts payable/receivable
    3. Tax management
    4. Cash flow forecasting
    5. Tracking and reporting
    Pros Cons
    • Modern and intuitive interface that makes it easy to use and navigate.
    • A high level of customization options allows businesses to tailor the system to their specific needs.
    • Accessible from anywhere with an internet connection.
    • High licensing, implementation, and training costs.
    • Implementation may take several months and require substantial resource investment.
    • The customization process can be complex and requires specialized knowledge.

    8. FreshBooks

    FreshBooks

    FreshBooks is a popular accounting software for multiple businesses, known for its easy-to-use interface and comprehensive invoicing capabilities. This accounting software for multiple clients simplifies expense tracking and time management, enhancing overall business efficiency.

    Why we picked it: We picked FreshBooks for its easy-to-use interface and comprehensive invoicing capabilities, which enhance overall business efficiency.

    Features:

    1. Bank reconciliation
    2. Multi-currency tracking
    3. Payment reminders
    4. Recurring payments and auto-bills
    5. Mileage tracking
    Pros Cons
    • Intuitive and easy-to-use interface.
    • FreshBooks integrates well with various third-party applications.
    • Provides customizable invoice templates, enabling businesses to maintain a consistent brand identity in their financial documents.
    • Some users find the level of customization for reports and invoice templates to be limited.
    • The software may experience slowdowns when handling a large amount of data.
    • Adding a team member costs extra per month, and the lower-tier plans limit your number of clients.

    9. Xero Accounting Software for Multiple Businesses

    Xero Accounting Software for Multiple Businesses

    Xero Accounting Software for Multiple Businesses offers a cloud-based platform designed to streamline financial operations. Its features include multi-currency support, automated bank feeds, and comprehensive financial reporting, making it one of the best accounting software for multiple entities.

    Why we picked it: We chose Xero for its cloud-based platform, which offers multi-currency support, automated bank feeds, and comprehensive financial reporting.

    Features:

    1. Invoicing and billing
    2. Accounts receivable
    3. Expense tracking and claim
    4. Automated bank feeds
    5. Financial reporting
    Pros Cons
    • Xero offers a clean and intuitive interface.
    • It allows users to access data from anywhere with an internet connection.
    • Integrates with banks to provide automatic synchronization of financial data.
    • Lack of dedicated phone support.
    • Pricing can be high for advanced features.
    • The automated bank reconciliation process has sometimes had glitches.

    10. SoftLedger

    SoftLedger

    SoftLedger is a versatile multi-entity accounting software that provides real-time financial insights and robust automation features. This multi-company accounting software supports various financial tasks, from consolidation to compliance, ensuring efficient management of multiple businesses.

    Why we picked it: We picked SoftLedger for its real-time financial insights and robust automation features that efficiently manage multiple business entities.

    Features:

    1. Ledgers and accounts payable/receivable
    2. Cryptocurrency accounting
    3. Automated bill tracking
    4. Bank feeds and reconciliation
    5. Financial reporting
    Pros Cons
    • SoftLedger offers an intuitive and easy-to-navigate platform.
    • It integrates seamlessly with other business applications through open APIs.
    • The software is helpful for businesses operating in multiple countries.
    • The software’s high level of customization can cause slow implementation.
    • There can be a learning curve when understanding all the features.
    • Some users have reported that certain software sections can be slow to operate.

    Overall Comparison of Accounting Systems in Malaysia

    Provider Connection Quality Bank Coverage Ease of Integration Data Enrichment
    HashMicro
    Netsuite
    Sage
    Quickbooks
    Wave
    Zoho Books
    Acumatica
    Xero

    Choosing the Right Multi-company Accounting Software

    Choosing the Right Multi-company Accounting Software

    The right accounting software is crucial for efficient financial management across multiple business entities. It is essential to consider several key factors to make an informed decision that aligns with your business needs.

    1. Ease of use:  The software should be easy to use, with a straightforward interface and adequate training resources to ensure smooth adoption and efficient workflows.
    2. Automation features: Choose software that offers strong automation for repetitive tasks to save time, reduce errors, and support more strategic work.
    3. Scalability:  Ensure the multi-company accounting software can scale with your business growth to handle an increasing number of entities and transactions without requiring a future system replacement.
    4. Integration capabilities: Select software that integrates seamlessly with your existing systems to maintain accurate data and minimize manual entry.
    5. Comprehensive reporting: Pick software that provides real-time, detailed financial reports so you can make informed decisions and track performance effectively.
    6. Security:  Ensure the software has robust security features to protect sensitive financial data and maintain compliance.
    7. Customer support: Choose software backed by reliable customer support, so you can receive prompt technical help and training when needed.

    By carefully assessing these factors, you can select the best accounting software for multiple entities that meets your needs and effectively manages fixed and variable cost components.

    “Implementing accounting software for multiple businesses isn’t just about consolidation; it’s about real-time control, cleaner audits, and faster decisions across every entity.”

    Angela Tan, Regional Manager

    Conclusion

    Choosing the right accounting software for multiple businesses is essential for ensuring accurate financial management and streamlined operations. The right solution enhances efficiency, provides valuable insights, and supports strategic decision-making across all business entities.

    HashMicro Accounting Software offers a robust and scalable solution tailored to the needs of multi-company operations. This multi-company accounting software has comprehensive features and seamless integrations make it an ideal choice for managing the complexities of multiple businesses effectively.

    Experience the benefits of efficient financial management and real-time insights with HashMicro. Sign up for a free demo today to discover how HashMicro Accounting Software can transform your multi-company financial operations and drive your business success.

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    FAQ About Multi Company Accounting Software

    • What is multi-company accounting software?

      Multi-company accounting software is a solution designed to help businesses manage financial processes across multiple companies or entities. It streamlines tasks such as consolidations, reporting, and inter-company transactions.

    • What is the best accounting software for multiple entities?

      The best multi-entity accounting software should support data consolidation, intercompany transactions, multi-currency, and scalable reporting. Solutions like HashMicro offer automated consolidation and real-time visibility across all entities, making it easier for businesses to manage financial operations at scale.

    • How do I manage multiple client accounts?

      Managing multiple client accounts requires a reliable system that tracks transactions, generates detailed reports, and ensures compliance. HashMicro’s accounting software provides powerful tools to manage and oversee multiple accounts effortlessly.

    • What is multi-entity accounting?

      Multi-entity accounting refers to managing financial data and processes for multiple companies or divisions under one system. It includes consolidated reporting, intercompany reconciliation, tax compliance, and consistent financial oversight across all entities.

    Angela Tan

    Regional Manager

    Expert Reviewer

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