You just wrapped up a major online sale: orders are pouring in, excitement is high, and your brand is getting noticed. But behind the scenes, your warehouse team is scrambling, shipments are delayed, and inventory numbers aren’t adding up.
If this sounds familiar, you’re not alone. As e-commerce businesses grow, the complexity of managing orders, stock levels, and supplier relationships multiplies. And without the right e-commerce supply chain software, even small issues can quickly snowball into lost revenue.
However, there are numerous options available in the market, so which one is the best fit for your business? Everyone also has its own pros, cons, and features, so how to determine that it actually matches your business?
In this article, we’ll share the 8 best e-commerce supply chain management software in Malaysia. Whether you’re handling a flood of orders from the marketplace, your own website, or even a mix of everything, the right software can help you manage your store more effectively.
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What is E-Commerce Supply Chain Software?
E-commerce supply chain software helps businesses manage all these behind-the-scenes activities across multiple channels like Shopee, Lazada, Shopify, and TikTok Shop. It connects online orders with warehouse stock, packing, shipping, and even return processes.
Compared to regular supply chain management software, which usually focuses on bulk shipments between factories, distributors, and retailers, e-commerce supply chain software handles a much higher volume of smaller, individual orders.
It is built to move quickly, adapt to customer demands, and manage direct-to-consumer sales across different online platforms in real-time.
Features of E-Commerce Supply Chain Software
To manage a fast-moving e-commerce business, it’s not enough to just track orders manually or rely on basic spreadsheets. A good e-commerce supply chain software should offer features that simplify inventory management, speed up fulfillment, and improve customer satisfaction.
Here are some key features you should look for:
- Multi-warehouse inventory visibility: Track stock levels across all warehouses and fulfillment centers in real-time from one dashboard.
- Automatic order routing to the nearest warehouse: Assign orders automatically to the closest warehouse to speed up picking, packing, and delivery.
- Marketplace and webstore integration: Connect orders from Shopee, Lazada, Shopify, Amazon, and TikTok Shop into a single system.
- Live order status tracking: Monitor every stage of an order’s journey, from payment confirmation to final delivery.
- AI-based demand forecasting: Predict future product demand based on real-time sales data, seasonality trends, and buying patterns.
- Returns and reverse logistics management: Handle customer returns efficiently by updating inventory, restocking returned items, and managing refunds.
8 Best E-Commerce Supply Chain Software in Malaysia
With so many options available, finding the right supply chain software for your e-commerce business can feel overwhelming. To make it easier, we’ve rounded up the top 8 e-commerce supply chain management tools in Malaysia.
1. HashMicro E-Commerce Supply Chain Software
Managing an e-commerce business means handling fast-moving inventory, rising customer demands, and complex logistics across multiple channels. Without a unified system, valuable time is lost sorting scattered data.
That’s why HashMicro’s Supply Chain Management is developed. From managing real-time inventory levels across multiple sales channels to automating the entire fulfillment cycle, HashMicro empowers you to keep up with rapid customer demands without missing a beat.
HashMicro is also developing Hashy AI, a built-in AI assistant that can speed up the supply chain’s processes even more, just by typing the commands in the provided chatbots. This assistant is not only useful for staff, but the managers can also oversee each progress quickly with this integrated system.
Furthermore, it can also integrate with popular marketplaces like Shopee and Lazada, as well as with other systems your business might have. It also provides a free demo that can be accessed by businesses who want to see the system’s full capabilities.
Features:
- Real-Time Inventory Management: Track inventory levels across multiple warehouses and sales channels, reduce stock discrepancies, and prevent lost sales due to stockouts.
- Automated Procurement Management: Receive automated low-stock alerts and trigger purchase orders instantly, ensuring optimal inventory replenishment without manual tracking.
- Shipment and Delivery Management: Monitor courier activities in real time to guarantee faster, more reliable deliveries and maintain a strong customer experience.
- Return Management and Reverse Logistics: Simplify the returns process with clear workflows.
- Advanced Demand Planning and Forecasting: Leverage predictive analytics to forecast demand patterns to prevent overstocking and missed sales opportunities.
- Multi-channel integration: Connect seamlessly with platforms like Shopify, Lazada, Shopee, and offline POS systems for unified operations.
- Warehouse optimization: Optimize picking, packing, and shipping workflows with automated task assignments and smart routing.
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Are you curious how much HashMicro charges for its software? You can find out by clicking on the pricing plan banner below!

2. Logiwa
Logiwa supply chain management software Malaysia is a cloud-based inventory solution designed to handle the demands of high-volume B2C and D2C businesses. It manages inventory more efficiently, improves order accuracy, and coordinates operations across sales channels.
Built with an open API, Logiwa can easily connect with other supply chain platforms like NetSuite and leading e-commerce systems such as Shopify. Its data-driven insights and analytics also support better decision-making.
Features:
- Real-time inventory tracking
- Returns management
- Automated picking and packing
- Shipping label generation
- Batch order processing
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3. Precoro E-Commerce Supply Chain Software
Precoro’s supply chain management solution centers around purchase approvals. It allows different teams, such as fulfillment, marketing, or operations, to oversee and authorize specific supply chain transactions based on their needs.
For instance, the fulfillment team might approve bulk purchases of packaging materials, while the marketing team signs off on promotional merchandise. With built-in finance tools and customizable approval workflows.
Features:
- Purchase order automation
- Supplier management
- Budget tracking
- Approval workflows
- Spend analytics
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4. NetSuite
NetSuite is an enterprise supply chain management solution that helps e-commerce businesses manage complex operations across multiple sales channels. Its predictive analytics tools support accurate demand forecasting.
NetSuite also integrates order management, inventory tracking, supplier coordination, and warehouse management into a single platform, which makes it easier to fulfill high order volumes and handle multi-location shipping.
Features:
- Real-time inventory tracking
- Order management
- Demand forecasting
- Warehouse management
- Returns management
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5. Shippabo E-Commerce Supply Chain Software
Shippabo is a supply chain management platform designed to simplify ocean freight shipping for businesses that import products from overseas.
It supports e-commerce companies that source pre-assembled goods or raw materials from international suppliers by managing shipping schedules, customs clearance, and freight tracking.
For e-commerce businesses handling large inventories and global sourcing, Shippabo helps improve shipment visibility, reduce import delays, and ensure smoother warehouse replenishment.
Features:
- Shipment tracking
- Predictive analysis
- Document management
- Collaboration tools
- Cost optimization
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6. Magaya Supply Chain
Magaya Supply Chain offers a comprehensive software solution built for retailers, warehouse operators, and third-party logistics providers. It helps businesses manage order tracking, warehouse operations, financial processes, and customer service.
It also keeps the data consistent and synchronized across systems. Moreover, Magaya connects seamlessly with the Magaya Digital Freight Portal, enabling real-time monitoring of bookings, shipments, and reporting activities.
Features:
- Real-time inventory tracking
- Returns management
- Shipping label generation
- Batch order processing
- E-commerce integration
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7. Glide
Glide offers a no-code platform tailored for e-commerce businesses seeking to optimize their supply chain operations. Its solutions are designed to enhance efficiency, accuracy, and scalability in managing various aspects of the e-commerce supply chain.
Glide offers pre-built templates, such as the Ecommerce Order Management template, to help businesses quickly set up and customize their SCM solutions. These templates can be tailored to fit specific operational needs, allowing for rapid deployment and iteration.
Features:
- Inventory management
- Order processing
- Customer relationship management
- Analytics and reporting
- Shipping label generation
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8. Netstock E-Commerce Supply Chain Software
Netstock offers a cloud-based solution designed to help small and mid-sized e-commerce businesses to maintain optimal stock levels, plan for future sales trends, and better align supply with customer demand, with its Netstock Predictor and Predictor PLUS.
Netstock also supports supplier management, inventory optimization, and sales and operations planning, making it easier for e-commerce brands to manage manufacturing schedules and warehouse capacity as they grow.
Features:
- Automated picking and packing
- Batch order processing
- Demand forecasting
- Multi-warehouse management
- Inventory tracking and management
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How to Choose the Best E-Commerce Supply Chain Software for Your Business
1. Start by mapping your sales channels and fulfillment flow
List every place you sell: Shopee, Lazada, Shopify, TikTok Shop, your own webstore, and track how orders move from sale to delivery. The right software should handle your real flow, not force you to adjust around it.
2. Look for real-time stock syncing and smart order routing
Your system must sync stock instantly across all channels to avoid overselling. Bonus points if it can automatically send customer orders to the nearest warehouse for faster shipping.
3. Check integrations beyond marketplaces
Marketplace links are a start, but serious software connects to couriers, warehouse systems, accounting, and customer loyalty platforms. Look for a system that builds a full ecosystem, not just patches.
4. Think about returns, not just outbound deliveries
Managing returns is just as important as sending orders out. Good e-commerce supply chain software will handle customer returns, restock returned products, and update your inventory without creating chaos.
5. Consider scalability from day one
Your software should work whether you’re fulfilling 50 orders a day or 5,000. Look for flexible warehousing options, easy multi-location support, and reporting that can keep up as you grow.
6. Pay attention to real customer support
Fast-growing e-commerce businesses can’t afford long downtimes. Choose a provider that offers real human support, preferably with local service teams who understand your logistics landscape.
Conclusion
Choosing the right e-commerce supply chain software helps businesses manage inventory, fulfill orders, and scale faster. With smarter systems in place, you can avoid stockouts, speed up deliveries, and keep your customers happy.
If you’re looking for a trusted partner to power your e-commerce operations, HashMicro Supply Chain Software is the perfect choice. From real-time inventory tracking to advanced forecasting, HashMicro helps your business grow without the chaos behind the scenes.
Experience how easy e-commerce logistics can be with HashMicro, built for businesses that want to lead. Ready to take control of your supply chain? It’s time to make the smart move with HashMicro. Try the free demo now!
FAQ on E-Commerce Supply Chain Software
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How is e-commerce supply chain software different from regular supply chain software?
E-commerce supply chain software handles lots of small online orders across platforms like Shopee and Lazada, with real-time tracking and automation. Traditional supply chain tools focus more on bulk shipping between factories, warehouses, and retailers, and may not support online sales as well.
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How does this type of software help with returns?
It automates the entire return process, like approving returns, updating stock levels, and processing refunds, so everything runs faster and with fewer errors. This helps businesses handle returns smoothly and keep customers happy.
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How can it improve customer satisfaction?
Customers get faster deliveries, accurate stock updates, and real-time tracking. Plus, when returns and exchanges are handled quickly, it builds trust and keeps customers coming back.
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Why is it useful to connect the software with marketplaces?
Connecting everything in one system makes it easier to track orders, update stock, and manage customer data across different sales channels. It also helps prevent overselling and gives a clearer view of how each platform is performing.